- capacity() - Method in class edu.berkeley.cs.succinct.util.buffers.ThreadSafeByteBuffer
-
- capacity() - Method in class edu.berkeley.cs.succinct.util.buffers.ThreadSafeIntBuffer
-
- capacity() - Method in class edu.berkeley.cs.succinct.util.buffers.ThreadSafeLongBuffer
-
- celloffsets - Variable in class edu.berkeley.cs.succinct.buffers.SuccinctBuffer
-
- charAt(long) - Method in class edu.berkeley.cs.succinct.buffers.SuccinctFileBuffer
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Get the character at index in file.
- charAt(long) - Method in interface edu.berkeley.cs.succinct.SuccinctFile
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Get character at ith index in file chunk.
- clear() - Method in class edu.berkeley.cs.succinct.bitmap.BitMap
-
Method to clear the contents of the bitmap.
- coff - Variable in class edu.berkeley.cs.succinct.buffers.SuccinctBuffer
-
- coloffsets - Variable in class edu.berkeley.cs.succinct.buffers.SuccinctBuffer
-
- colsizes - Variable in class edu.berkeley.cs.succinct.buffers.SuccinctBuffer
-
- CommonUtils - Class in edu.berkeley.cs.succinct.util
-
- CommonUtils() - Constructor for class edu.berkeley.cs.succinct.util.CommonUtils
-
- CommonUtils.DictionaryUtils - Class in edu.berkeley.cs.succinct.util
-
- CommonUtils.DictionaryUtils() - Constructor for class edu.berkeley.cs.succinct.util.CommonUtils.DictionaryUtils
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- compact() - Method in class edu.berkeley.cs.succinct.util.buffers.ThreadSafeByteBuffer
-
- compact() - Method in class edu.berkeley.cs.succinct.util.buffers.ThreadSafeIntBuffer
-
- compact() - Method in class edu.berkeley.cs.succinct.util.buffers.ThreadSafeLongBuffer
-
- compare(byte[], int) - Method in class edu.berkeley.cs.succinct.buffers.SuccinctFileBuffer
-
Compare entire buffer with input starting at specified index.
- compare(byte[], int, int) - Method in class edu.berkeley.cs.succinct.buffers.SuccinctFileBuffer
-
Compare entire buffer with input starting at specified index and offset
into buffer.
- compare(byte[], int) - Method in interface edu.berkeley.cs.succinct.SuccinctFile
-
Compare entire buffer with input starting at specified index.
- compare(byte[], int, int) - Method in interface edu.berkeley.cs.succinct.SuccinctFile
-
Compare entire buffer with input starting at specified index and offset
into buffer.
- compare(Range, Range) - Method in class edu.berkeley.cs.succinct.SuccinctIndexedFile.RangeSizeComparator
-
- compareTo(RegExMatch) - Method in class edu.berkeley.cs.succinct.regex.RegExMatch
-
- compareTo(Range) - Method in class edu.berkeley.cs.succinct.util.Range
-
- compute(RegEx, RegExExecutor.SortType) - Method in class edu.berkeley.cs.succinct.regex.executor.RegExExecutor
-
Computes the regular expression subtree.
- compute(RegEx, RegExExecutor.SortType) - Method in class edu.berkeley.cs.succinct.regex.executor.SuccinctRegExExecutor
-
Computes the regular expression with forward search.
- compute() - Method in class edu.berkeley.cs.succinct.regex.SuccinctRegEx
-
Computes the results for the regular expression.
- computeSuccinctly(RegEx) - Method in class edu.berkeley.cs.succinct.regex.executor.SuccinctBwdRegExExecutor
-
Uses Succinct data representation (backward search) to compute regular expression.
- computeSuccinctly(RegEx) - Method in class edu.berkeley.cs.succinct.regex.executor.SuccinctFwdRegExExecutor
-
Uses Succinct data representation (forward search) to compute regular expression.
- computeSuccinctly(RegEx) - Method in class edu.berkeley.cs.succinct.regex.executor.SuccinctRegExExecutor
-
Uses Succinct data representation to compute regular expression.
- Construct - Class in edu.berkeley.cs.succinct.examples
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- Construct() - Constructor for class edu.berkeley.cs.succinct.examples.Construct
-
- contains(long) - Method in class edu.berkeley.cs.succinct.util.Range
-
- contextmap - Variable in class edu.berkeley.cs.succinct.buffers.SuccinctBuffer
-
- contextMap - Variable in class edu.berkeley.cs.succinct.SuccinctCore
-
- continueBwdSearch(byte[], Range) - Method in class edu.berkeley.cs.succinct.buffers.SuccinctFileBuffer
-
Continue backward search on query to obtain SA range.
- continueBwdSearch(byte[], Range) - Method in interface edu.berkeley.cs.succinct.SuccinctFile
-
Continue backward search on query to obtain SA range.
- continueFwdSearch(byte[], Range, int) - Method in class edu.berkeley.cs.succinct.buffers.SuccinctFileBuffer
-
Continue forward search on query to obtain SA range.
- continueFwdSearch(byte[], Range, int) - Method in interface edu.berkeley.cs.succinct.SuccinctFile
-
Continue forward search on query to obtain SA range.
- count(byte[]) - Method in class edu.berkeley.cs.succinct.buffers.SuccinctFileBuffer
-
Get count of pattern occurrences in original input.
- count(byte[]) - Method in interface edu.berkeley.cs.succinct.SuccinctFile
-
Get count of pattern occurrences in original input.